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r-biocsingular: fix makedepends
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parent
58ed8781a6
commit
b4c8966172
2 changed files with 8 additions and 10 deletions
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@ -2,10 +2,10 @@
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# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
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# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=BiocSingular
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_pkgname=BiocSingular
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_pkgver=1.20.0
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_pkgver=1.22.0
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pkgname=r-${_pkgname,,}
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgrel=0
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pkgdesc="Singular Value Decomposition for Bioconductor Packages"
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pkgdesc="Singular Value Decomposition for Bioconductor Packages"
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arch=(x86_64)
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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url="https://bioconductor.org/packages/$_pkgname"
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@ -21,6 +21,9 @@ depends=(
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r-s4vectors
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r-s4vectors
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r-scaledmatrix
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r-scaledmatrix
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)
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)
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makedepends=(
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r-assorthead
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)
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checkdepends=(
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checkdepends=(
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r-testthat
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r-testthat
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)
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)
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@ -32,14 +35,8 @@ optdepends=(
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r-testthat
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r-testthat
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)
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('d5a29e6d4dad421ec381313627270a0e')
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md5sums=('bb704ac1d36b56a1b8ea141ffad65ab6')
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b2sums=('53c788e4003bbb2fdf9880d430033f1bfe5dafe0e117e0e48e6ad5443c4fcd62716330b79563f3318c9ca39b10a62e7394f46cf597225d38c4b23a5e3399194a')
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b2sums=('a30a62e3e89de60baceafeb6f2dae274951d5d0ba6ca9d1db10f9b8538ae39108535b768f89ea5758a7c1fc495326a5ff81f5eedfd81a6a4fd54cb42e97987f1')
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prepare() {
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# skip test that makes a coredump
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sed -i '/"scale calculations work correctly"/a\ \ \ \ skip("dumps core")' \
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"$_pkgname/tests/testthat/test-utils.R"
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}
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build() {
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build() {
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mkdir build
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mkdir build
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@ -13,6 +13,7 @@ repo_depends:
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- r-s4vectors
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- r-s4vectors
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- r-scaledmatrix
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- r-scaledmatrix
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repo_makedepends:
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repo_makedepends:
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- r-assorthead
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- r-testthat
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- r-testthat
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update_on:
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update_on:
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- source: rpkgs
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- source: rpkgs
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