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python-isal: fix build for version 1.7.0

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kbipinkumar 2024-08-25 21:30:11 +05:30
parent 186ace6815
commit baeb151805
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2 changed files with 27 additions and 6 deletions
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19
BioArchLinux/abpoa/relax-cython-dep.patch Normal file
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@ -0,0 +1,19 @@
Description: relax cython dependency to tolerate version 3.
Older versions are no longer available in Debian.
Author: Étienne Mollier <emollier@debian.org>
Forwarded: not-needed
Last-Update: 2024-07-20
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- abpoa.orig/setup.py
+++ abpoa/setup.py
@@ -69,7 +69,7 @@
author_email = "gaoy1@chop.edu",
license = "MIT",
keywords = "multiple-sequence-alignment partial-order-graph-alignment",
- setup_requires=["cython<3"], # see https://github.com/cython/cython/issues/5568
+ setup_requires=["cython"], # see https://github.com/cython/cython/issues/5568
# Build instructions
ext_modules = [
Extension(

14
BioArchLinux/python-isal/PKGBUILD
View file

@ -2,15 +2,16 @@
pkgname=python-isal pkgname=python-isal
_module=${pkgname#python-} _module=${pkgname#python-}
pkgver=1.6.1 pkgver=1.7.0
pkgrel=2 pkgrel=1
pkgdesc='Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library' pkgdesc='Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library'
arch=('x86_64') arch=('x86_64')
url="https://github.com/pycompression/python-isal" url="https://github.com/pycompression/python-isal"
license=('PSF') license=('PSF')
depends=(
depends=('python' 'glibc') 'python'
'glibc'
)
makedepends=( makedepends=(
'python-build' 'python-build'
'python-installer' 'python-installer'
@ -20,10 +21,11 @@ makedepends=(
'python-sphinx' 'python-sphinx'
'python-sphinx_rtd_theme' 'python-sphinx_rtd_theme'
'python-sphinx-argparse' 'python-sphinx-argparse'
'python-versioningit'
) )
options=(!emptydirs) options=(!emptydirs)
source=("https://files.pythonhosted.org/packages/source/${_module::1}/$_module/$_module-$pkgver.tar.gz") source=("https://files.pythonhosted.org/packages/source/${_module::1}/$_module/$_module-$pkgver.tar.gz")
sha256sums=('7b64b75d260b544beea3f59cb25a6f520c04768818ef4ac316ee9a1f2ebf18f5') sha256sums=('9eb9457ed27fd0a8a7b403a5f4f9e6c8d1a44c2ca28ecd2f2bf3aed90b0a74bf')
build() { build() {
cd "$_module-$pkgver" cd "$_module-$pkgver"