mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
5f059be696
* adding packages: initial documentation * *: polish some format --------- Co-authored-by: Kuoi <kuoi@bioarchlinux.org>
64 lines
2.4 KiB
Markdown
64 lines
2.4 KiB
Markdown
<h3 align="center">
|
|
<img src="https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/bioarchlinux.png" alt="BioArchLinux" width="150">
|
|
</p>
|
|
BioArchLinux</h3>
|
|
|
|
<h3 align="center">
|
|
<a href="https://bioarchlinux.org/packages">Packages</a> <a href="https://wiki.bioarchlinux.org">Wiki</a> <a href="https://matrix.to/#/#bioarchlinux:matrix.org">Matrix</a> <a href="https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio">Mirror</a> <a href="https://repo.bioarchlinux.org">Repo</a> <a href="https://build.bioarchlinux.org">Status</a>
|
|
</h3>
|
|
|
|
## Special sponsor
|
|
|
|
<div>
|
|
<a href="https://v.ps/" target="_blank"><img height="70px" src="https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/xtom.png"></a>
|
|
</div>
|
|
|
|
## Usage
|
|
|
|
### ArchLinux and ArchLinux based distributions
|
|
|
|
Add the following content to the `/etc/pacman.conf`
|
|
```
|
|
[bioarchlinux]
|
|
Server = https://repo.bioarchlinux.org/$arch
|
|
```
|
|
You can replace the `https://repo.bioarchlinux.org/$arch` with any mirror in [mirrorlist](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)
|
|
|
|
install GPG keyring to use bioarchlinux
|
|
```
|
|
# pacman-key --recv-keys B1F96021DB62254D
|
|
# pacman-key --finger B1F96021DB62254D
|
|
# pacman-key --lsign-key B1F96021DB62254D
|
|
```
|
|
|
|
update the database
|
|
```
|
|
# pacman -Syu
|
|
```
|
|
|
|
install any package
|
|
```
|
|
# pacman -S foo
|
|
```
|
|
|
|
### Windows
|
|
|
|
You can use [WSL](https://docs.microsoft.com/en-us/windows/wsl/install) to use our repo, see [here](https://github.com/BioArchLinux/wsl)
|
|
|
|
### Docker
|
|
You can use [docker](https://hub.docker.com/r/bioarchlinux/bioarchlinux) to use our repo, see [here](https://github.com/BioArchLinux/docker)
|
|
|
|
### ISO
|
|
You can use ISO image via virtual machine software to use our repo, see [here](https://github.com/BioArchLinux/iso)
|
|
|
|
### non-root Linux users
|
|
You can use [junest](https://github.com/fsquillace/junest) BioArchLinux image to use our repo, see [here](https://github.com/BioArchLinux/junest-img)
|
|
|
|
## Citation
|
|
|
|
> Zhang G. Hu Y. Drobot V. Staal J. Yi Y. Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1
|
|
|
|
[Get Bibtex Here](https://raw.githubusercontent.com/BioArchLinux/Packages/master/BioArchLinux.bibtex)
|
|
|
|
## Submitting packages
|
|
Those wishing to submit 'PKGBUILD' for packages to repo please refer to [adding packages](/Documentation/adding%20packages.md) document
|