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63 lines
1.2 KiB
Bash
63 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=animalcules
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_pkgver=1.18.2
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Interactive microbiome analysis toolkit"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('Artistic-2.0')
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depends=(
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r-ape
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r-assertthat
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r-caret
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r-covr
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r-deseq2
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r-dplyr
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r-dt
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r-forcats
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r-ggplot2
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r-gunifrac
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r-limma
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r-magrittr
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r-multiassayexperiment
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r-plotly
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r-rentrez
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r-reshape2
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r-rocit
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r-s4vectors
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r-scales
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r-shiny
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r-shinyjs
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r-summarizedexperiment
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r-tibble
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r-tsne
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r-umap
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r-vegan
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r-xml
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)
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optdepends=(
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r-biocstyle
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r-biomformat
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r-devtools
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r-glmnet
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r-knitr
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r-rmarkdown
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r-testthat
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r-usethis
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('aa982cf7a1ee5300e2974be6dd3fc34f')
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b2sums=('e9f9ba6651bbe8ec5393501d2e3da18f49ab90082eb6f3ba8bc7f9044daa00b4fed80b79088820db2c03446e4a36cb7bcc8fa3d9f8601e85834c0ad71f7c6fa9')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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