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r-*: use SPDX license identifier for "Artistic-2.0"

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This commit is contained in:
Pekka Ristola 2024-01-16 14:50:09 +02:00
parent 5ef1ef5d5f
commit 02dfebdc60
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GPG key ID: 2C20BE716E05213E
131 changed files with 131 additions and 131 deletions
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2
BioArchLinux/r-ahmassbank/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="MassBank Annotation Resources for AnnotationHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhubdata
)

2
BioArchLinux/r-ancombc/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Microbiome differential abudance and correlation analyses with bias correction"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-cvxr
r-desctools

2
BioArchLinux/r-animalcules/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Interactive microbiome analysis toolkit"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ape
r-assertthat

2
BioArchLinux/r-annotate/PKGBUILD
View file

@ -10,7 +10,7 @@ pkgrel=1
pkgdesc="Annotation for microarrays"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biobase

2
BioArchLinux/r-annotationdbi/PKGBUILD
View file

@ -10,7 +10,7 @@ pkgrel=1
pkgdesc="Manipulation of SQLite-based annotations in Bioconductor"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biobase
r-biocgenerics

2
BioArchLinux/r-anvilworkflow/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Run workflows implemented in Terra/AnVIL workspace"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-anvil
r-httr

2
BioArchLinux/r-aplot/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Decorate a 'ggplot' with Associated Information"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggfun
r-ggplot2

2
BioArchLinux/r-arrmdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Example dataset for normalization of Illumina 450k Methylation data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-ataccogaps/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Analysis Tools for scATACseq Data with CoGAPS"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.mmusculus.ucsc.mm10

2
BioArchLinux/r-bandle/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="An R package for the Bayesian analysis of differential subcellular localisation experiments"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
blas
lapack

2
BioArchLinux/r-beeswarm/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=9
pkgdesc="The Bee Swarm Plot, an Alternative to Stripchart"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-benchdamic/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Benchmark of differential abundance methods on microbiome data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-aldex2
r-ancombc

2
BioArchLinux/r-biocbaseutils/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="General utility functions for developing Bioconductor packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-biocfhir/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Illustration of FHIR ingestion and transformation using R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocbaseutils
r-dplyr

2
BioArchLinux/r-biocgenerics/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="S4 generic functions used in Bioconductor"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-biochail/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="basilisk and hail"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-basilisk
r-biocfilecache

2
BioArchLinux/r-biochubsshiny/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="View AnnotationHub and ExperimentHub Resources Interactively"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-dt

2
BioArchLinux/r-biocmanager/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Access the Bioconductor Project Package Repository"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-biocversion/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Set the appropriate version of Bioconductor packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-bionar/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Biological Network Analysis in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-clustercons

2
BioArchLinux/r-breastcancervdx/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-bsgenome.hsapiens.1000genomes.hs37d5/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="1000genomes Reference Genome Sequence (hs37d5)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-bsgenome
)

2
BioArchLinux/r-bsgenome.scerevisiae.ucsc.saccer3/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-bsgenome
)

2
BioArchLinux/r-bsgenomeforge/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Forge BSgenome data packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biobase
r-biocgenerics

2
BioArchLinux/r-cbnplot/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="plot bayesian network inferred from gene expression data based on enrichment analysis results"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocfilecache
r-bnlearn

2
BioArchLinux/r-cellxgenedp/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Discover and Access Single Cell Data Sets in the cellxgene Data Portal"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-curl
r-dplyr

2
BioArchLinux/r-chemminer/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Cheminformatics Toolkit for R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-base64enc
r-biocgenerics

2
BioArchLinux/r-cnvmetrics/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Copy Number Variant Metrics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-genomicranges

2
BioArchLinux/r-compounddb/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Creating and Using (Chemical) Compound Annotation Databases"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationfilter
r-biobase

2
BioArchLinux/r-compspot/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Tool for identifying and comparing significantly mutated genomic hotspots"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-data.table
r-ggplot2

2
BioArchLinux/r-concordexr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Calculate the concordex coefficient"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-cli

2
BioArchLinux/r-ctdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Data companion to CTexploreR"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-experimenthub
)

2
BioArchLinux/r-cytofqc/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Labels normalized cells for CyTOF data and assigns probabilities for each label"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-catalyst
r-e1071

2
BioArchLinux/r-dapar/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Tools for the Differential Analysis of Proteins Abundance with R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-apcluster

2
BioArchLinux/r-delayedarray/PKGBUILD
View file

@ -12,7 +12,7 @@ pkgrel=1
pkgdesc="A unified framework for working transparently with on-disk and in-memory array-like datasets"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-iranges

2
BioArchLinux/r-demuxmix/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-gridextra

2
BioArchLinux/r-depmap/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Cancer Dependency Map Data Package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-dplyr

2
BioArchLinux/r-dose/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Disease Ontology Semantic and Enrichment analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocparallel

2
BioArchLinux/r-dreamlet/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Cohort-scale differential expression analysis of single cell data using linear (mixed) models"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ashr
r-biocgenerics

2
BioArchLinux/r-ebseq/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="An R package for gene and isoform differential expression analysis of RNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-blockmodeling
r-gplots

2
BioArchLinux/r-enmix/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Quality control and analysis tools for Illumina DNA methylation BeadChip"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase

2
BioArchLinux/r-enrichviewnet/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="From functional enrichment results to biological networks"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-enrichplot
r-gprofiler2

2
BioArchLinux/r-ensdb.hsapiens.v79/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Ensembl based annotation package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ensembldb
)

2
BioArchLinux/r-ensdb.mmusculus.v79/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Ensembl based annotation package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ensembldb
)

2
BioArchLinux/r-flowcore/PKGBUILD
View file

@ -10,7 +10,7 @@ pkgrel=4
pkgdesc="Basic structures for flow cytometry data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biobase
r-biocgenerics

2
BioArchLinux/r-flowdensity/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Sequential Flow Cytometry Data Gating"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-car
r-flowcore

2
BioArchLinux/r-gdnainrnaseqdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="RNA-seq data with different levels of gDNA contamination"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-experimenthub

2
BioArchLinux/r-gdnax/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Diagnostics for assessing genomic DNA contamination in RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-annotationhub

2
BioArchLinux/r-gdr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Umbrella package for R packages in the gDR suite"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-gdrcore
r-gdrimport

2
BioArchLinux/r-gdrcore/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Processing functions and interface to process and analyze drug dose-response data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-bumpymatrix

2
BioArchLinux/r-gdrimport/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Package for handling the import of dose-response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-assertthat
r-bumpymatrix

2
BioArchLinux/r-gdrstyle/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="A package with style requirements for the gDR suite"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-bioccheck
r-biocmanager

2
BioArchLinux/r-gdrtestdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="R data package with testing dose reponse data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-checkmate
)

2
BioArchLinux/r-gdrutils/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="A package with helper functions for processing drug response data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-bumpymatrix

2
BioArchLinux/r-genomautomorphism/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Compute the automorphisms between DNA's Abelian group representations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel

2
BioArchLinux/r-genomeinfodb/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Utilities for manipulating chromosome names, including modifying them to follow a particular naming style"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-genomeinfodbdata

2
BioArchLinux/r-genomeinfodbdata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Species and taxonomy ID look up tables used by GenomeInfoDb"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-genomicdatacommons/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="NIH / NCI Genomic Data Commons Access"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-dplyr
r-genomicranges

2
BioArchLinux/r-genomicranges/PKGBUILD
View file

@ -12,7 +12,7 @@ pkgrel=1
pkgdesc="Representation and manipulation of genomic intervals"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-genomeinfodb

2
BioArchLinux/r-geotcgadata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Processing Various Types of Data on GEO and TCGA"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-cqn
r-data.table

2
BioArchLinux/r-ggfun/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Miscellaneous Functions for 'ggplot2'"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-cli
r-ggplot2

2
BioArchLinux/r-ggimage/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Use Image in 'ggplot2'"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggfun
r-ggplot2

2
BioArchLinux/r-ggplotify/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Convert Plot to 'grob' or 'ggplot' Object"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-gridgraphics

2
BioArchLinux/r-ggsc/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Visualizing Single Cell Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
blas
r-cli

2
BioArchLinux/r-ggtreedendro/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Drawing 'dendrogram' using 'ggtree'"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-ggtree

2
BioArchLinux/r-gloscope/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Population-level Representation on scRNA-Seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-fnn

2
BioArchLinux/r-granie/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biomart

2
BioArchLinux/r-hpo.db/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="A set of annotation maps describing the entire Human Phenotype Ontology"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-annotationhub

2
BioArchLinux/r-humantranscriptomecompendium/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Tools to work with a Compendium of 181000 human transcriptome sequencing studies"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-s4vectors
r-shiny

2
BioArchLinux/r-interactivedisplay/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="Package for enabling powerful shiny web displays of Bioconductor objects"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocgenerics

2
BioArchLinux/r-iseede/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="iSEE extension for panels related to differential expression analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-deseq2
r-edger

2
BioArchLinux/r-iseehub/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="iSEE for the Bioconductor ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biocmanager

2
BioArchLinux/r-iseeindex/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="iSEE extension for a landing page to a custom collection of data sets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocfilecache
r-dt

2
BioArchLinux/r-iseepathways/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="iSEE extension for panels related to pathway analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-isee

2
BioArchLinux/r-lefser/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="R implementation of the LEfSE method for microbiome biomarker discovery"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-coin
r-ggplot2

2
BioArchLinux/r-matrixstats/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Functions that Apply to Rows and Columns of Matrices (and to Vectors)"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-metaboannotation/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Utilities for Annotation of Metabolomics Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biocgenerics

2
BioArchLinux/r-metaphor/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Metabolic Pathway Analysis of RNA"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-clusterprofiler
r-ggplot2

2
BioArchLinux/r-minfidata/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Example data for the Illumina Methylation 450k array"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest

2
BioArchLinux/r-mobilitytransformr/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Effective mobility scale transformation of CE-MS(/MS) data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-metabocoreutils
r-msnbase

2
BioArchLinux/r-mpo.db/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=2
pkgdesc="A set of annotation maps describing the Mouse Phenotype Ontology"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-annotationhub

2
BioArchLinux/r-msbackendmsp/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Mass Spectrometry Data Backend for NIST msp Files"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-iranges

2
BioArchLinux/r-msbackendsql/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="SQL-based Mass Spectrometry Data Backend"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel

2
BioArchLinux/r-msdatahub/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Mass Spectrometry Data on ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-experimenthub
)

2
BioArchLinux/r-msstatsshiny/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="MSstats GUI for Statistical Anaylsis of Proteomics Experiments"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-data.table
r-dplyr

2
BioArchLinux/r-multimodalexperiment/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Integrative Bulk and Single-Cell Experiment Container"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-iranges

2
BioArchLinux/r-octad.db/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Open Cancer TherApeutic Discovery (OCTAD) database"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-experimenthub
)

2
BioArchLinux/r-octad/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Open Cancer TherApeutic Discovery (OCTAD)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase

2
BioArchLinux/r-ogre/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Calculate, visualize and analyse overlap between genomic regions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationhub
r-assertthat

2
BioArchLinux/r-org.ce.eg.db/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=1
pkgdesc="Genome wide annotation for Worm"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-annotationdbi
)

2
BioArchLinux/r-panviz/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Integrating Multi-Omic Network Data With Summay-Level GWAS Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-colorspace
r-data.table

2
BioArchLinux/r-parody/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Parametric And Resistant Outlier DYtection"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-plasmut/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-dplyr
r-tibble

2
BioArchLinux/r-plyinteractions/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Extending tidy verbs to genomic interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-dplyr

2
BioArchLinux/r-prostar/PKGBUILD
View file

@ -9,7 +9,7 @@ pkgrel=1
pkgdesc="Provides a GUI for DAPAR"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-colourpicker
r-dapar

2
BioArchLinux/r-protgenerics/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Generic infrastructure for Bioconductor mass spectrometry packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r
)

2
BioArchLinux/r-psmatch/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Handling and Managing Peptide Spectrum Matches"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocgenerics
r-biocparallel

2
BioArchLinux/r-qsvar/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Generate Quality Surrogate Variable Analysis for Degradation Correction"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-summarizedexperiment

2
BioArchLinux/r-redisparam/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=2
pkgdesc="Provide a 'redis' back-end for BiocParallel"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-biocparallel
r-futile.logger

2
BioArchLinux/r-regionereloaded/PKGBUILD
View file

@ -8,7 +8,7 @@ pkgrel=3
pkgdesc="Multiple Association for Genomic Region Sets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=(Artistic2.0)
license=('Artistic-2.0')
depends=(
r-ggplot2
r-ggrepel

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