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47 lines
1.1 KiB
Bash
47 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=MobilityTransformR
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Effective mobility scale transformation of CE-MS(/MS) data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('Artistic-2.0')
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depends=(
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r-metabocoreutils
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r-msnbase
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r-spectra
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r-xcms
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)
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checkdepends=(
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r-msdata
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-msdata
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r-rmarkdown
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r-roxygen2
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('1d0f7904be49e25235092248b757df19')
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b2sums=('f03d81fc313fd9259bc487efb47ff06cf8e5ad63348a6376cc3802c9434dd8c0b0db825e6776a5c6fdd52407b9766425a560d078d2d47e81d977058867c35195')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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