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44 lines
1 KiB
Bash
44 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <myname at malacology dot net>
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pkgname=idba
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pkgver=1.1.3
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pkgrel=3
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pkgdesc="Basic iterative de Bruijn graph assembler for second-generation sequencing reads \
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https://doi.org/10.1007/978-3-642-12683-3_28 \
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https://doi.org/10.1093/bioinformatics/bts174
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"
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arch=('i686' 'x86_64')
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url="https://github.com/loneknightpy/idba"
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license=('GPL')
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depends=('gcc-libs' 'python' 'perl')
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makedepends=('make' 'autoconf' 'gcc')
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source=($pkgname-$pkgver.tar.gz::$url/archive/$pkgver.tar.gz)
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sha256sums=('6b1746a29884f4fa17b110d94d9ead677ab5557c084a93b16b6a043dbb148709')
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prepare() {
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cd "$srcdir/$pkgname-$pkgver"
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2to3 -w script/scan.py
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}
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build() {
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cd "$srcdir/$pkgname-$pkgver"
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autoreconf --install
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./configure --prefix=/usr
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make
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}
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check() {
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cd $srcdir/$pkgname-$pkgver
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make unittest
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}
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package() {
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cd "$srcdir/${pkgname}-$pkgver"
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make DESTDIR="$pkgdir" install
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for file in bin/*; do
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if [[ -f "$file" && -x "$file" ]]; then
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install -Dm755 "$file" "$pkgdir/usr/bin/$(basename "$file")"
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fi
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done
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mv $pkgdir/usr/bin/{,idba_}test
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}
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