add mrbayes-mpi

mrbayes-mpi/PKGBUILD

@@ -0,0 +1,36 @@
+# Maintainer: Guoyi ("malacology") <guoyizhang at malacology.net>
+# Contributor: Guoyi ("malacology") <guoyizhang at malacology.net>
+# Contributor: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=mrbayes-mpi
+pkgver=3.2.7
+pkgrel=2
+pkgdesc="MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models"
+arch=('i686' 'x86_64')
+url="nbisweden.github.io/mrbayes/"
+license=('GPL3')
+depends=('openmpi' 'readline''gcc')
+optdepends=('beagle-lib: for using GPU calculations among other enhancements - rebuild package after installing this dep')
+conflicts=(mrbayes)
+provides=(mrbayes)
+source=("https://github.com/NBISweden/MrBayes/archive/v${pkgver}.tar.gz")
+sha256sums=('64da39c01f606d0413ce90a1dd3c1ce2cbdef4cbad99aee8a4b2391a2e8db244')
+
+build() {
+  cd ${srcdir}/MrBayes-$pkgver
+  #Build with beagle-lib support if available:
+  if [ -f /usr/lib/libhmsbeagle.so ]
+  then
+    msg "beagle-lib found! Building with CUDA support."
+    ./configure --with-beagle=/usr --prefix=${pkgdir}/usr --enable-mpi=yes
+  else
+    msg "beagle-lib not found! Building without CUDA support."
+    ./configure --with-beagle=no --prefix=${pkgdir}/usr --enable-mpi=yes
+  fi
+  make
+}
+package() {
+  cd ${srcdir}/MrBayes-$pkgver
+  make install
+  install ${pkgdir}/usr/bin/mb ${pkgdir}/usr/bin/mb-mpi
+}

mrbayes-mpi/lilac.py

@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()

mrbayes-mpi/lilac.yaml

@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: NBISweden/MrBayes
+    use_latest_release: true

mrbayes/PKGBUILD

@@ -9,7 +9,7 @@ pkgdesc="A program for the Bayesian estimation of phylogeny"
 arch=('i686' 'x86_64')
 license=('GPL')
 url="http://nbisweden.github.io/MrBayes/"
-depends=('readline')
+depends=('readline' 'gcc')
 optdepends=('beagle-lib: for using GPU calculations among other enhancements - rebuild package after installing this dep')
 source=(https://github.com/NBISweden/MrBayes/archive/v${pkgver}.tar.gz)
 sha256sums=('64da39c01f606d0413ce90a1dd3c1ce2cbdef4cbad99aee8a4b2391a2e8db244')

mrbayes/lilac.yaml

@@ -1,4 +1,4 @@
-build_prefix: extra-x86_64
+build_prefix: multilib
 maintainers:
   - github: starsareintherose
     email: starsareintherose@outlook.com