Commit graph

46 commits

Author SHA1 Message Date
Pekka Ristola
d923172864
r-*: use SPDX license identifier for "GPL-2 | GPL-3" 2024-01-17 20:53:28 +02:00
Pekka Ristola
f4a1a4699f
r-*: use SPDX license identifier for "GPL (>= 2.0)" 2024-01-17 20:44:21 +02:00
Pekka Ristola
b9d5342b86
r-*: use SPDX license identifier for "GPL (>= 2)" 2024-01-17 20:30:12 +02:00
Pekka Ristola
e97d5283c1
r-*: use SPDX license identifier for "GPL" 2024-01-17 20:22:05 +02:00
Pekka Ristola
217aacb50a
r-*: use SPDX license identifier for "BSL-1.0" 2024-01-16 19:27:54 +02:00
Pekka Ristola
9ab70080dd
r-*: use SPDX license identifier for "BSD_3_clause + file LICENSE" 2024-01-16 15:38:19 +02:00
Pekka Ristola
2bf2a216ab
r-*: use SPDX license identifier for "BSD_2_clause + file LICENSE" 2024-01-16 15:19:42 +02:00
Pekka Ristola
02dfebdc60
r-*: use SPDX license identifier for "Artistic-2.0" 2024-01-16 14:50:09 +02:00
Pekka Ristola
5ef1ef5d5f
r-*: use SPDX license identifier for "Apache License 2.0" 2024-01-16 14:23:06 +02:00
Pekka Ristola
04d6977619
r-*: use SPDX license identifier for "Apache License (== 2.0)" 2024-01-16 14:13:36 +02:00
Pekka Ristola
aad069f881
r-*: use SPDX license identifier for "AGPL-3" 2024-01-15 15:08:14 +02:00
Pekka Ristola
e270c87e55
r-*: add "GPL (>=2)" to known licenses 2024-01-11 02:43:01 +02:00
Pekka Ristola
ee2c271df2
r-flowpeaks: use metadata checks 2023-12-29 19:48:43 +02:00
Pekka Ristola
420348337e
r-maptree: use metadata checks
The "Unlimited" license text is taken from the "Writing R
Extensions" manual[0], which states that

"The mandatory ‘License’ field in the DESCRIPTION file should
specify the license of the package in a standardized form.
[...] Individual specifications must be one of [...] The
string ‘Unlimited’, meaning that there are no restrictions on
distribution or use other than those imposed by relevant laws
(including copyright laws)."

[0] https://cran.r-project.org/doc/manuals/R-exts.html#Licensing
2023-12-27 12:01:39 +02:00
Pekka Ristola
5441757c32
r-bigmemory.sri: use metadata checks 2023-12-24 17:18:15 +02:00
Pekka Ristola
22e18373ef
r-dbitest: fix depends 2023-12-22 16:40:09 +02:00
Pekka Ristola
6602e62bc1
r-*: strip dot from the end of pkgdesc 2023-12-15 17:39:50 +02:00
Pekka Ristola
47920515a5
r-*: avoid repeating package name in pkgdesc 2023-12-15 13:32:16 +02:00
Pekka Ristola
416dac4abf
r-*: ignore some values in SystemRequirements
GNU make and a C++ compiler are always available, because
make and gcc are dependencies of base-devel.

The ignored values "C++11", "C++17" and "GNU make" indicate
build-time dependencies only.
2023-12-15 07:42:01 +02:00
Pekka Ristola
36c6f470c9
r-phenomis: init 2023-12-03 17:02:01 +02:00
Pekka Ristola
32406fc423
r-*: use SPDX license identifier for "LGPL" R packages
This applies only to packages that have specified exactly
"LGPL" as the license in DESCRIPTION.
2023-12-02 18:27:15 +02:00
Pekka Ristola
14aed2ae4b
r-orthos: init 2023-11-27 13:36:38 +02:00
Pekka Ristola
3fd21f9df1
r-multirnaflow: init 2023-11-27 13:29:16 +02:00
Pekka Ristola
a29a7aa401
r-*: use SPDX license identifier for CC0 R packages 2023-11-25 10:30:32 +02:00
Pekka Ristola
d1c1a8f0cf
r-paws.common: init, dependency of r-paws.storage, which is dependency of r-rarr 2023-11-09 15:23:31 +02:00
Pekka Ristola
e9895844c5
r-pbdmpi: init, checkdependency of r-rnetcdf 2023-10-10 14:43:14 +03:00
Pekka Ristola
a121503934
r-mvnormtest: use metadata checks
Also add support for DESCRIPTION file not having a `NeedsCompilation`
value at all. In this case, the `expect_needscompilation` argument
for `r_pre_build` should be set to "" (empty string).
2023-10-08 12:39:10 +03:00
Pekka Ristola
1eef35280d
r-glmmtmb: use metadata checks 2023-09-17 13:15:59 +03:00
Pekka Ristola
254f01b51e
r-stars: use metadata checks 2023-09-12 16:58:04 +03:00
Pekka Ristola
96bda329a6
r-chemminer: use metadata checks 2023-07-22 13:03:27 +03:00
Pekka Ristola
c3b3a1c40e
r-distr: use metadata checks 2023-07-15 20:38:47 +03:00
Pekka Ristola
137c1ffe5d
r-annotate: use metadata checks 2023-07-13 20:50:01 +03:00
Pekka Ristola
f726729dcd
r-*: improve R package checking
- handle DESCRIPTION files with missing whitespace
- allow manually specifying expected NeedsCompilation value
2023-07-12 00:04:51 +03:00
Pekka Ristola
83a7be536e
r-rfast: use metadata checks 2023-07-03 21:53:16 +03:00
Pekka Ristola
42addd49b0
r-mapproj: add Lucent Public License to known licenses 2023-06-30 21:57:49 +03:00
Pekka Ristola
dda7484100
r-common: init, depends for r-logr 2023-06-27 20:45:52 +03:00
Pekka Ristola
15b5a9f58e
r-ggfun: use metadata checks 2023-06-25 23:10:00 +03:00
Pekka Ristola
425656697d
r-iterators: use metadata checks 2023-06-19 23:55:56 +03:00
Pekka Ristola
c6b01113b0
r-rcppziggurat: use metadata checks 2023-06-17 15:45:59 +03:00
Pekka Ristola
8295536dbb
r-igraph: fix depends, use metadata checks 2023-06-17 14:56:11 +03:00
Pekka Ristola
0182409f7f
r-lpsymphony: fix depends, use metadata checks 2023-06-15 20:56:45 +03:00
Pekka Ristola
1604319817
r-*: add Apache license to known licenses in lilac_r_utils 2023-06-12 07:10:49 +03:00
Pekka Ristola
a8734a0c06
r-*: use rpkgs nvchecker source in a few packages
Also add a check for upstream md5sum
2023-06-04 18:05:24 +03:00
Pekka Ristola
55c2a30bd1
r-ps: fix another build error
also don't print all the PKGBUILD variables to log
2023-06-01 19:51:56 +03:00
Pekka Ristola
560945eb74
r-ps: fix build error
```
    Traceback (most recent call last):
      File "/usr/lib/python3.11/site-packages/lilac2/worker.py", line 216, in main
        with load_lilac(Path('.')) as mod:
      File "/usr/lib/python3.11/contextlib.py", line 137, in __enter__
        return next(self.gen)
               ^^^^^^^^^^^^^^
      File "/usr/lib/python3.11/site-packages/lilac2/lilacpy.py", line 46, in load_lilac
        spec.loader.exec_module(mod)
      File "<frozen importlib._bootstrap_external>", line 940, in exec_module
      File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
      File "/usr/share/lilac/Packages/BioArchLinux/r-ps/lilac.py", line 7, in <module>
        from lilac_r_utils import r_pre_build
      File "/usr/share/lilac/Packages/lilac-extensions/lilac_r_utils.py", line 2, in <module>
        from lilaclib import _G, edit_file, run_protected
    ImportError: cannot import name '_G' from 'lilaclib' (/usr/lib/python3.11/site-packages/lilaclib.py)
```
2023-06-01 06:22:36 +03:00
pekkarr
822fdab8a6
r*: Implement metadata checks for R packages (#141)
Use the checks with `r-fs` package as an example.
2023-05-29 21:25:24 +08:00