Packages/README.md
2022-07-07 14:46:46 +08:00

2.4 KiB

BioArchLinux

BioArchLinux

Special sponsor

Usage

Add the fllowing content to the /etc/pacman.conf

[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch

You can replace the https://repo.bioarchlinux.org/$arch with any mirror in mirrorlist

install GPG keyring to use bioarchlinux

# pacman-key --recv-keys B1F96021DB62254D
# pacman-key --finger B1F96021DB62254D
# pacman-key --lsign-key B1F96021DB62254D

update the database

# pacman -Syy

install any package

# pacman -S foo

Besides, you are suggested to install r-bspm,

# pacman -S r-bspm

and add the following line to your ~/.Rprofile so that pacman will take over install.packages.

bspm::enable()

Below is an example.

r$> install.packages("cssam")
[sudo] password for user:
Install system packages as root...
:: Synchronizing package databases...
 core
 extra
 community
 multilib
 archlinuxcn
 arch4edu
 bioarchlinux
:: Retrieving packages...
 r-cssam-1.2.4-1-any
:: Processing package changes...
(1/1) r-cssam

Request a package

If you find some package useful but not in our repository, (for example even if you used r-bspm it still installed a package from CRAN/Bioconductor), you can open an issue and tell us.

Details

For details of usage, participation, contribution, maintainence contact and sponsorship, please see our repository wiki page.

License and Code of Conduct

License is AGPL-3.0 and Code of Conduct is here.

Acknowledgments

Thanks go to lilydjwg, the creator of lilac, for her help on lilac. It's grateful for all the users for using this repository and supporting BioArchLinux.