mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
77 lines
2.4 KiB
Markdown
77 lines
2.4 KiB
Markdown
<h3 align="center">
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<img src="https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/bioarchlinux.png" alt="BioArchLinux" width="150">
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</p>
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BioArchLinux</h3>
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## Special sponsor
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<div>
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<a href="https://v.ps/" target="_blank"><img height="70px" src="https://raw.githubusercontent.com/BioArchLinux/Packages/master/logo/xtom.png"></a>
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</div>
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## Usage
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Add the fllowing content to the `/etc/pacman.conf`
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```
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[bioarchlinux]
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Server = https://repo.bioarchlinux.org/$arch
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```
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You can replace the `https://repo.bioarchlinux.org/$arch` with any mirror in [mirrorlist](https://raw.githubusercontent.com/BioArchLinux/mirror/main/mirrorlist.bio)
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install GPG keyring to use bioarchlinux
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```
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# pacman-key --recv-keys B1F96021DB62254D
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# pacman-key --finger B1F96021DB62254D
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# pacman-key --lsign-key B1F96021DB62254D
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```
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update the database
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```
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# pacman -Syy
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```
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install any package
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```
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# pacman -S foo
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```
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Besides, you are suggested to install `r-bspm`,
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```
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# pacman -S r-bspm
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```
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and add the following line to your `~/.Rprofile` so that `pacman` will take over `install.packages`.
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```R
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bspm::enable()
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```
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Below is an example.
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```R
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r$> install.packages("cssam")
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[sudo] password for user:
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Install system packages as root...
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:: Synchronizing package databases...
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core
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extra
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community
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multilib
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archlinuxcn
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arch4edu
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bioarchlinux
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:: Retrieving packages...
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r-cssam-1.2.4-1-any
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:: Processing package changes...
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(1/1) r-cssam
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```
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## Request a package
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If you find some package useful but not in our repository, (for example even if you used `r-bspm` it still installed a package from CRAN/Bioconductor),
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you can open an issue and tell us.
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## Details
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For details of [usage](https://github.com/BioArchLinux/Packages/wiki/Usage), [participation](https://github.com/BioArchLinux/Packages/wiki/Participation), [contribution](https://github.com/BioArchLinux/Packages/wiki/Contribution-to-the-repository), [maintainence contact](https://github.com/BioArchLinux/Packages/wiki/Become-maintainer) and [sponsorship](https://github.com/BioArchLinux/Packages/wiki/Sponsorship), please see our repository wiki page.
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## License and Code of Conduct
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License is [AGPL-3.0](./LICENSE) and Code of Conduct is [here](./CODE_OF_CONDUCT.md).
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## Acknowledgments
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Thanks go to [lilydjwg](https://github.com/lilydjwg), the creator of lilac, for her help on lilac. It's grateful for all the users for using this repository and supporting BioArchLinux.
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